This is the Fall 2016 Kick-Off Seminar, presenting an overview of LCSR, useful information, and an introduction to the faculty and labs.
While robots at the human size scale are generally composed of structures that are moved by a small set of actuators that shift materials or components with a well-defined shape, other principles for designing moving structures can control movement at the micron scale. For example, cells can move by disassembling parts of their rigid skeleton, or cytoskeleton, and reassembling new components in a different location. The structures that are disassembled and reassembled are often filaments that grow, shrink and form junctions between one another. Networks of rigid filaments serve as a cheap, reusable, movable scaffold that shapes and reshapes the cell.
Could we design synthetic materials to perform tasks of engineering interest at the micron scale? I’ll describe how we are using ideas from DNA nanotechnology to build synthetic filaments and how we can program where and when filaments assemble and disassemble and how they organize. We are able to use quantitative control over microscopic parameters, modeling and automated analysis to build increasingly sophisticated structures that can find, connect and move locations in the environment, form architectures and heal when damaged.
Bernhard Fuerst is a research engineer at the Engineering Research Center at Johns Hopkins University. He received his Bachelor’s degree in Biomedical Computer Science at the University for Medical Technology in Austria in 2009 and his Master’s degree in Biomedical Computing at the Technical University in Munich, Germany in 2011. During his studies he joined Siemens Corporate Research in Princeton to research biomechanical simulations for compensation of respiratory motion under Dr. Ali Kamen’s supervision, and Georgetown University to investigate techniques for meta-optimization using particle swarm optimizers under Dr. Kevin Cleary’s supervision. Since joining the Johns Hopkins University, he worked on establishing Dr. Nassir Navab’s research group to focus on robotic ultrasound, minimally invasive nuclear imaging, and bioelectric localization and navigation.
Dr. David L. Akin
Director, Space Systems Laboratory
Associate Professor of Aerospace Engineering
University of Maryland
For decades, the Space Systems Laboratory at the University of Maryland has been involved with advancing the capabilities of dexterous robotic systems to facilitate operations in challenging environments such as space and deep ocean. This work has been focused on developing integrated systems for these “extreme” environments, usually involving both mobility and dexterous manipulation. The talk will focus on the design, development, and operation of robotic systems developed in the SSL, including the Ranger Dexterous Servicing System (originally intended as a Space Shuttle flight experiment), SAMURAI (a 6000-meter deep ocean autonomous sampling system), an exoskeleton system for shoulder rehabilitation, and various rovers and robot arms.
David L. Akin is an Associate Professor in the Department of Aerospace Engineering and Director of the Space Systems Laboratory at the University of Maryland. He earned SB (1974), SM (1975), and ScD (1981) degrees from M.I.T. His current research focuses on space operations, including dexterous robotics, pressure suit design, and human-robot interactions. He is also active in the areas of spacecraft design, space simulation, and space systems analysis. He has been principal investigator for several space flight systems, and for multiple experimental space suit and robotic systems. He has over 100 professional publications in journals and conference proceedings.
Contrary to popular notions, insects have sophisticated brains that allow them to adjust control so that behaviors are consistent with current internal and external conditions. The Central Complex (CX) is a set of midline neuropils in the brains of all arthropods. It is made up of the columnar structures including the protocerebral bridge, fan-shaped body and ellipsoid body. Neurons in these structures project to the paired nodules and lateral accessory lobes where they have access to descending interneurons that alter movements.
Over the past couple of decades, the CX has received a remarkable amount of attention by insect neurobiologists. We now know that several types of sensory information projects to the CX including mechanical information from the antennae and various visual cues including polarized light. Polarized light is used by several migratory insects to guide their long distance flights. We also know that activity in the CX precedes changes in movement and stimulation in the same regions can evoke turning behavior. Recently, navigation cues such as head direction compass cells have been identified in several insects.
Cockroaches are scavengers that forage through darkened environments. Like many foraging insects, they must keep track of targets while negotiating barriers. Thus, they need to simultaneously integrate sensory information and produce appropriate motor commands. As cockroaches move toward a darkened shelter they continually asses their situation and decide to either continue or turn based on whether they still see the shelter (Daltorio et al., 2013). This foraging behavior requires that the insect know its orientation and the direction of recent turns. It must then use that information to influence descending commands that result in turning behaviors. By performing tetrode recordings in a restrained preparation, we found CX neurons that encode the animal’s orientation using external and internal sensory cues, similarly to mammalian head direction cells as well as the direction of recent rotations (Varga and Ritzmann, 2016). How can this information influence movement in the arena? We recorded from tethered and freely walking cockroaches and found CX neurons in which activity increased just prior to changes in direction or speed (Martin et al., 2015). The patterns of movement coded in each CX neuron represents a population code that covers the entire range of horizontal movements that cockroaches make in the arena. Moreover, stimulation through the same tetrodes evoked movements consistent with the recorded activity. For individuals that consistently evoked turning in a particular direction, we further examined leg reflexes associated with the femoral chordotonal organ (FCo), which evokes reflex changes in the motor neurons that control the femur-tibia joint as well as the adjacent coxa-trochanter joint. Lesion of all descending activity causes a reversal in the FCo reflex to the slow depressor neuron (Ds) of the coxa-trochanter joint, which is consistent with changes associated with turning. Together these studies demonstrated that the cockroach CX relies upon a variety of sensory modalities to encode the animal’s orientation, which is then used to generate directionally specific motor commands, and therefore, direct locomotion.
More recently, we have turned to an insect predator to expand our understanding of how brain systems alter behavior. Predators must track down and accurately strike prey. Many change their strategy for obtaining food as they become satiated. We have been able to tap into CX activity during this process and have begun to examine how neuromodulators associated with satiety alter CX activity and related stalking behavior.
Roy E. Ritzmann is a Professor in the Department of Biology at Case Western Reserve University in Cleveland, Ohio. He received the B.A. degree in Zoology from the University of Iowa, the Ph.D. in Biology from the University of Virginia then moved to a postdoctoral position at Cornell University where he began working with insects on the neural circuitry underlying escape systems. His laboratory focuses on behavioral and neural properties that are involved in insect movement around barriers in complex terrain most recently focusing upon context and state dependent control in an insect brain region called the central complex (a group of neuropils that reside on the midline of virtually all arthropod brains). To that end they employ both extracellular (multi-channel) and intracellular recording techniques in the brain and thoracic ganglia of cockroaches and praying mantises. Using these techniques the Ritzmann laboratory has made progress in understanding how the central complex integrates massive amounts of information on the insect’s surroundings and internal state into descending commands that adjust movements toward goals and away from threats in a context dependent fashion. The Ritzmann laboratory has also collaborated on many biologically inspired robotic projects.
In this talk, I will overview our recent work on the development of automatic methods for the interpretation of biomedical data from multiple modalities and scales. At the cellular scale, I will present a structured matrix factorization method for segmenting neurons and finding their spiking patterns in calcium imaging videos, and a shape analysis method for classifying embryonic cardiomyocytes in optical imaging videos. At the organ scale, I will present a Riemannian framework for processing diffusion magnetic resonance images of the brain, and a stochastic tracking method for detecting Purkinje fibers in cardiac MRI. At the patient scale, I will present dynamical system and machine learning methods for recognizing surgical gestures and assessing surgeon skill in medical robotic motion and video data.
Professor Vidal received his B.S. degree in Electrical Engineering (highest honors) from the Pontificia Universidad Catolica de Chile in 1997 and his M.S. and Ph.D. degrees in Electrical Engineering and Computer Sciences from the University of California at Berkeley in 2000 and 2003, respectively. He was a research fellow at the National ICT Australia in 2003 and has been a faculty member in the Department of Biomedical Engineering and the Center for Imaging Science of The Johns Hopkins University since 2004. He has held several visiting faculty positions at Stanford, INRIA/ENS Paris, the Catholic University of Chile, Universite Henri Poincare, and the Australian National University. Dr. Vidal was co-editor (with Anders Heyden and Yi Ma) of the book “Dynamical Vision” and has co-authored more than 180 articles in biomedical image analysis, computer vision, machine learning, hybrid systems, robotics and signal processing. Dr. Vidal is or has been Associate Editor of Medical Image Analysis, the IEEE Transactions on Pattern Analysis and Machine Intelligence, the SIAM Journal on Imaging Sciences and the Journal of Mathematical Imaging and Vision, and guest editor of Signal Processing Magazine. He is or has been program chair for ICCV 2015, CVPR 2014, WMVC 2009, and PSIVT 2007. He was area chair for ICCV 2013, CVPR 2013, ICCV 2011, ICCV 2007 and CVPR 2005. Dr. Vidal is recipient of numerous awards for his work, including the 2012 J.K. Aggarwal Prize for “outstanding contributions to generalized principal component analysis (GPCA) and subspace clustering in computer vision and pattern recognition”, the 2012 Best Paper Award in Medical Robotics and Computer Assisted Interventions (with Benjamin Bejar and Luca Zappella), the 2011 Best Paper Award Finalist at the Conference on Decision and Control (with Roberto Tron and Bijan Afsari), the 2009 ONR Young Investigator Award, the 2009 Sloan Research Fellowship, the 2005 NFS CAREER Award and the 2004 Best Paper Award Honorable Mention (with Prof. Yi Ma) at the European Conference on Computer Vision. He also received the 2004 Sakrison Memorial Prize for “completing an exceptionally documented piece of research”, the 2003 Eli Jury award for “outstanding achievement in the area of Systems, Communications, Control, or Signal Processing”, the 2002 Student Continuation Award from NASA Ames, the 1998 Marcos Orrego Puelma Award from the Institute of Engineers of Chile, and the 1997 Award of the School of Engineering of the Pontificia Universidad Catolica de Chile to the best graduating student of the school. He is a fellow of the IEEE and a member of the ACM.
The seminar for this week is cancelled due to MICCAI 2016
Numerous physical systems are governed by partial differential equations or involve delays/transport. Such infinite-dimensional models have been a challenge to the ODE-accustomed control engineers who seek feedback designs that are both constructive and provide stability guarantees. About 15 years this situation changed with the emergence of “continuum backstepping” approach for PDEs. The backstepping designs, whose initial applications were for Navier-Stokes equations, yield explicit feedback laws which convert the original system into a desired well-behaved “target system” (for Navier-Stokes, the target is a heat equation system). I will present the basic methodological ideas of PDE backstepping and illustrate them with examples that come from fluid flows, phase change, 3D printing, multi-vehicle robotic swarms, microbial populations, and opinion spreading in online social networks.
Miroslav Krstic holds the Alspach endowed chair and is the founding director of the Cymer Center for Control Systems and Dynamics at UC San Diego. He also serves as Associate Vice Chancellor for Research at UCSD. As a graduate student, Krstic won the UC Santa Barbara best dissertation award and student best paper awards at CDC and ACC. Krstic is Fellow of IEEE, IFAC, ASME, SIAM, and IET (UK), Associate Fellow of AIAA, and foreign member of the Academy of Engineering of Serbia. He has received the PECASE, NSF Career, and ONR Young Investigator awards, the Axelby and Schuck paper prizes, the Chestnut textbook prize, the ASME Nyquist Lecture Prize, and the first UCSD Research Award given to an engineer. Krstic has also been awarded the Springer Visiting Professorship at UC Berkeley, the Distinguished Visiting Fellowship of the Royal Academy of Engineering, the Invitation Fellowship of the Japan Society for the Promotion of Science, and the Honorary Professorships from the Northeastern University (Shenyang), Chongqing University, and Donghua University, China. He serves as Senior Editor in IEEE Transactions on Automatic Control and Automatica, as editor of two Springer book series, and has served as Vice President for Technical Activities of the IEEE Control Systems Society and as chair of the IEEE CSS Fellow Committee. Krstic has coauthored eleven books on adaptive, nonlinear, and stochastic control, extremum seeking, control of PDE systems including turbulent flows, and control of delay systems.
Management of carotid artery disease, towards preventing strokes, currently relies on a simple algorithm, which has proved insufficient for a large number of mostly asymptomatic subjects, posing a significant clinical challenge. Ultrasound imaging in combination with image analysis hold promise for addressing this challenge, through the in vivo estimation of morphological, mechanical and anatomical features of the carotid artery, the artery that takes blood to the brain.
This presentation highlights various advanced image analysis techniques applied on carotid ultrasound, in an attempt to identify novel risk markers and optimise disease management. Texture features, estimated from static images, describe different patterns of tissue allocation, presumably as a consequence of exerted stresses. Mechanical features, estimated from temporal image sequences, characterise tissue elasticity and are more sensitive to early tissue changes due to ageing or disease. Anatomical features, including arterial diameters, wall thickness and lesion size, can be automatically extracted using segmentation tools. These methodologies, along with biochemical and clinical indices, are integrated in a web-based platform, which relies on a semantically-aided architecture and allows for intelligent archival and retrieval of data, thus facilitating and enhancing the entire diagnostic procedure.
In view of the valuable information on lesion composition and stability revealed by ultrasound-image-based features, and the noninvasiveness and low-cost of ultrasound imaging, these approaches are directed towards improved risk stratification, increased patient safety and cost-efficiency. Their clinical usefulness remains to be demonstrated in large trials.
Spyretta Golemati is Assistant Professor in Biomedical Engineering and a member of the First Intensive Care Unit of the Medical School of the University of Athens.
Dr Golemati holds a Diploma in Mechanical Engineering from the National Technical University of Athens, Greece, and a M.Sc. and a Ph.D. degree in Bioengineering from Imperial College London, UK.
Her research interests include (a) medical image analysis, with emphasis on vascular ultrasound image analysis, (b) biosignal processing, and (c) vascular physiology and pathophysiology. She has co-authored 32 papers published in international scientific peer-reviewed journals, 12 book chapters, and 44 papers published in international scientific peer-reviewed conference proceedings. She has participated in 7 funded national and international research projects (in one, as co-ordinator). Dr Golemati has acted as reviewer of national and international research proposals as well as of papers submitted to international scientific journals and conferences. She is a member of the Institute of Electrical and Electronic Engineers [Engineering in Medicine and Biology Society (IEEE-EMBS), Ultrasonics, Ferroelectrics and Frequency Control (IEEE-UFFC)], the Technical Chamber of Greece, and the Hellenic Atherosclerosis Society. She is Associate Editor of the journal Ultrasonics. She is a grantee of the Fulbright Foundation-Greece for the academic year 2016-2017.